About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68288836_68288980_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68288836 - 68288980
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGG
5'SS Class:
major
3'SS Sequence:
CTTCCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTCAGTT
Flanking Amino Acid:
ESVRAVENVKGGITNSVSSP
Intron Amino Acid Position:
1236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
43.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.3
0.57
0.9
69
37
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
51.3
0.12
1.9
77.16
39.7

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015156
68288569 - 68315645
27077