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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68289109_68290242_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68289109 - 68290242
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAG
U12 Branch Point Sequence:
CACAGCAGAATT
Flanking Amino Acid:
KYSHSNSRISARSSKNRRKA
Intron Amino Acid Position:
1193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.4
67.1
44.6
Major BPS
59
0.22
1.5
67.7
36.5
Major PPT
87.5
0.84
0.7
79.8
32.2
Minor 5ss
39.8
-1.1
3.1
49.3
40.4
Minor BPS
40
-0.6
2
51.52
42.8

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077
ENSAPLT00000045971
68285643 - 68315645
30003