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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68292272_68292783_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68292272 - 68292783
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAGCAT
U12 Branch Point Sequence:
GCATCAGTAGCA
Flanking Amino Acid:
AAMLLEQYAQDYEEAVLLLL
Intron Amino Acid Position:
1077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
50.9
0.02
1.5
63.4
42.8
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
42.7
-0.5
2.3
54.27
43.8

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077
ENSAPLT00000045971
68285643 - 68315645
30003