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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68292846_68294218_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68292846 - 68294218
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGCTCCTGAAAA
Flanking Amino Acid:
KLSRLAQSMAGKLVEQRRHA
Intron Amino Acid Position:
1056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
69.6
0.49
1
59.5
39
Major PPT
80.1
0.68
0.7
75.8
26.4
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
63.4
0.42
1.6
70.75
40.8

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077
ENSAPLT00000045971
68285643 - 68315645
30003