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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68296216_68297051_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
68296216 - 68297051
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTTGGTT
5'SS Class:
weak_major
3'SS Sequence:
TTATTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTCACA
Flanking Amino Acid:
VIIVAEKSQKDPKEYLPFLN
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
62.3
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.7
0.78
0.8
80.1
31.7
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
69.3
0.6
1.7
79.69
36.4

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045971
68285643 - 68315645
30003
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077