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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68297201_68297824_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68297201 - 68297824
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTGTAT
5'SS Class:
major
3'SS Sequence:
TCTTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTTCTTTCATT
Flanking Amino Acid:
IALQKVHDLRESISPNVTAV
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1
66.3
35
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.6
0.82
0.7
80.9
29.7
Minor 5ss
39.1
-1.2
3.3
55.1
49.2
Minor BPS
68
0.65
1.7
84.22
37.1

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077
ENSAPLT00000045971
68285643 - 68315645
30003