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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68302848_68303678_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68302848 - 68303678
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACA
Flanking Amino Acid:
QTALTRIGGEEVILGLTDRC
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.7
84.6
29.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
69.6
0.61
1.9
85.1
33.8

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077