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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68307014_68307663_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68307014 - 68307663
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAG
U12 Branch Point Sequence:
TATCCAGTAAGA
Flanking Amino Acid:
TLPFQKGQVKVNELLWNADS
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
48.2
-0.1
1.7
64.4
42.8
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
45.1
-0.3
2.4
63.38
42.4

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077
ENSAPLT00000045971
68285643 - 68315645
30003