Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68310639_68310970_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

68310639 - 68310970

Intron Length:

332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATTAT

U12 Branch Point Sequence:

AAATCTTCTACT

Flanking Amino Acid:

KQIHQNEFGEGKFVALGWGK

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.9

35.3

Major BPS

69.6

0.49

1.2

60.1

46.3

Major PPT

83.3

0.75

0.7

81.6

29.6

Minor 5ss

32.2

-2

3.5

47.6

47.9

Minor BPS

50.2

0.09

1.8

68.86

41.8

Associated Gene:

Gene:

ELP1

Ensembl Gene ID:

ENSAPLG00000014409

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031246

68285643 - 68315645

30003

ENSAPLT00000015156

68288569 - 68315645

27077

ENSAPLT00000045971

68285643 - 68315645

30003