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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68314665_68315492_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68314665 - 68315492
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TCTCCATGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
CAGTTGTTAAGC
Flanking Amino Acid:
LVELGAAGQPVTREVSLTAE
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
73.9
0.54
1
65.5
40.1
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
45.7
-0.3
2.3
54.16
44.2

Associated Gene:

Gene:
ELP1
Ensembl Gene ID:
ENSAPLG00000014409
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031246
68285643 - 68315645
30003
ENSAPLT00000015156
68288569 - 68315645
27077
ENSAPLT00000045971
68285643 - 68315645
30003