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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68328768_68329840_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68328768 - 68329840
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGGC
5'SS Class:
major
3'SS Sequence:
TGTGCCTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTGAACTAACC
Flanking Amino Acid:
AEEGLNLNPVSEYDEYGFMT
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.2
38.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
79.1
0.65
0.9
69.5
41.6
Minor 5ss
30.8
-2.2
3.3
42.3
44.5
Minor BPS
48.1
-0.1
2.2
69.64
41.1

Associated Gene:

Gene:
TBC1D2
Ensembl Gene ID:
ENSAPLG00000028461
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027653
68318686 - 68337911
19226
ENSAPLT00000026749
68318686 - 68337911
19226
ENSAPLT00000018724
68317388 - 68336050
18663
ENSAPLT00000046705
68317388 - 68337911
20524
ENSAPLT00000039416
68316878 - 68336050
19173