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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68330312_68331593_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68330312 - 68331593
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAT
U12 Branch Point Sequence:
CTGTCCATCACA
Flanking Amino Acid:
PAIGYCQGLNRLAAVALLVL
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
62.1
0.3
1.4
72.5
43.5
Major PPT
72
0.5
0.9
65.3
34.8
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
53
0.09
2.1
67.91
44.5

Associated Gene:

Gene:
TBC1D2
Ensembl Gene ID:
ENSAPLG00000028461
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026749
68318686 - 68337911
19226
ENSAPLT00000018724
68317388 - 68336050
18663
ENSAPLT00000046705
68317388 - 68337911
20524
ENSAPLT00000039416
68316878 - 68336050
19173
ENSAPLT00000027653
68318686 - 68337911
19226