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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68331715_68334125_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68331715 - 68334125
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCAACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTTGTCAACT
Flanking Amino Acid:
YYSDTLITSQVDQRVFKDFL
Intron Amino Acid Position:
764

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.5
0.57
0.9
71.8
38.2
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
61.6
0.44
2.2
87.74
37.8

Associated Gene:

Gene:
TBC1D2
Ensembl Gene ID:
ENSAPLG00000028461
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026749
68318686 - 68337911
19226
ENSAPLT00000018724
68317388 - 68336050
18663
ENSAPLT00000046705
68317388 - 68337911
20524
ENSAPLT00000039416
68316878 - 68336050
19173
ENSAPLT00000027653
68318686 - 68337911
19226