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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68378329_68379165_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68378329 - 68379165
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TGTCTCTTACTC
Flanking Amino Acid:
IEPRSGTVLQEASNKSHRVN
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
69.2
0.48
1
61
37.1
Major PPT
83.2
0.75
0.7
77.2
31.5
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
58.8
0.26
1.6
68
37.8

Associated Gene:

Gene:
CORO2A
Ensembl Gene ID:
ENSAPLG00000014225
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014832
68342010 - 68383850
41841