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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68379283_68380659_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68379283 - 68380659
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAG
U12 Branch Point Sequence:
GTGATTCTAGCT
Flanking Amino Acid:
NNRQIALWDQNDLSVPLVEE
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
46.5
-0.2
1.6
50.2
44.9
Major PPT
66.1
0.36
1
57.8
43.1
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
45
-0.3
1.8
61.66
42.3

Associated Gene:

Gene:
CORO2A
Ensembl Gene ID:
ENSAPLG00000014225
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014832
68342010 - 68383850
41841