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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68380765_68381116_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68380765 - 68381116
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATGTTCATTT
Flanking Amino Acid:
DTNMLYVVGKGDGNIRYYEI
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
74.6
37.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73.8
0.54
0.9
72.6
37.6
Minor 5ss
37.6
-1.4
3.3
50.9
45.8
Minor BPS
43.7
-0.4
2.1
60.23
44.2

Associated Gene:

Gene:
CORO2A
Ensembl Gene ID:
ENSAPLG00000014225
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014832
68342010 - 68383850
41841