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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68382918_68383718_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68382918 - 68383718
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAA
U12 Branch Point Sequence:
GTTAGTGTAAAG
Flanking Amino Acid:
ECPPPKTENELLHMFYRQQE
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
57.5
0.19
1.4
61.7
43.1
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
41
-0.8
2.4
49.76
44.1

Associated Gene:

Gene:
CORO2A
Ensembl Gene ID:
ENSAPLG00000014225
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014832
68342010 - 68383850
41841