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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6842371_6843012_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6842371 - 6843012
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAATGGC
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTTTGTGCATT
Flanking Amino Acid:
SLEEQPSYKDNQKSKESNQI
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
65.9
38.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.7
0.76
0.8
76.9
37.3
Minor 5ss
34.8
-1.7
3.4
47.5
41.9
Minor BPS
44.3
-0.3
2.4
70.32
41.3

Associated Gene:

Gene:
SKOR2
Ensembl Gene ID:
ENSAPLG00000022487
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023357
6840100 - 6868229
28130