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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68428565_68428654_F

Intron Information:

Intron Rank:
142506
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
68428565 - 68428654
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGCAGG
5'SS Class:
weak_major
3'SS Sequence:
TCTTGGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTCTTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.2
49.6
46.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
76.8
0.6
1
69.7
40.3
Minor 5ss
47.8
-0.2
2.6
66.7
44.3
Minor BPS
70.8
0.73
1.4
87.49
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026789
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039367
68428370 - 68452476
24107