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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68428732_68449982_F

Intron Information:

Intron Rank:
142507
Intron Class:
major
Intron Phase:
Intron Coordinates:
68428732 - 68449982
Intron Length:
21251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
74.3
29.6
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
56
0.27
2
83.6
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026789
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039367
68428370 - 68452476
24107