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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68448295_68449982_F

Intron Information:

Intron Rank:
142502
Intron Class:
major
Intron Phase:
Intron Coordinates:
68448295 - 68449982
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
74.3
29.6
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
56
0.27
2
83.6
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026789
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022834
68447387 - 68452981
5595