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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68450044_68452406_F

Intron Information:

Intron Rank:
142503
Intron Class:
major
Intron Phase:
Intron Coordinates:
68450044 - 68452406
Intron Length:
2363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATTATC
5'SS Class:
major
3'SS Sequence:
GCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACATTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.1
36.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.2
0.79
0.8
79.9
32.1
Minor 5ss
39.9
-1.1
2.8
46.7
41.8
Minor BPS
46.1
-0.2
1.8
60.64
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026789
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022834
68447387 - 68452981
5595
ENSAPLT00000047648
68449826 - 68452476
2651
ENSAPLT00000039367
68428370 - 68452476
24107
ENSAPLT00000036830
68448844 - 68452476
3633