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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68468819_68469098_F

Intron Information:

Intron Rank:
150288
Intron Class:
major
Intron Phase:
Intron Coordinates:
68468819 - 68469098
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CGCTTCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCCTTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.3
0.39
0.9
59.2
37
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
55.7
0.16
1.4
59.98
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030774
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034287
68468502 - 68473589
5088