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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68469219_68473122_F

Intron Information:

Intron Rank:
150289
Intron Class:
major
Intron Phase:
Intron Coordinates:
68469219 - 68473122
Intron Length:
3904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.3
0.77
0.7
82.6
28
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030774
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034287
68468502 - 68473589
5088