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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6850867_6851248_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6850867 - 6851248
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATACAGATTA
Flanking Amino Acid:
LKKDVENMGKEELQKVLFEQ
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.7
0.65
0.9
80.7
31.3
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
43.6
-0.4
2
59.56
39.8

Associated Gene:

Gene:
SKOR2
Ensembl Gene ID:
ENSAPLG00000022487
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023357
6840100 - 6868229
28130