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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68643298_68647824_F

Intron Information:

Intron Rank:
148469
Intron Class:
major
Intron Phase:
Intron Coordinates:
68643298 - 68647824
Intron Length:
4527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029934
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043760
68610781 - 68647845
37065
ENSAPLT00000032397
68601059 - 68647845
46787