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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6865288_6867222_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6865288 - 6867222
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.5
0.89
0.7
84.7
29.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
SKOR2
Ensembl Gene ID:
ENSAPLG00000022487
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023357
6840100 - 6868229
28130