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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68746255_68780831_F

Intron Information:

Intron Rank:
123701
Intron Class:
major
Intron Phase:
Intron Coordinates:
68746255 - 68780831
Intron Length:
34577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTACTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.2
26.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.3
0.75
0.9
80.2
37.3
Minor 5ss
42.2
-0.9
2.8
52.8
38.5
Minor BPS
50.6
0.1
2
71.06
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016701
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046982
68744306 - 68781259
36954