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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6875234_6876821_F

Intron Information:

Intron Rank:
151125
Intron Class:
major
Intron Phase:
Intron Coordinates:
6875234 - 6876821
Intron Length:
1588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCAG
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTCTTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
59.7
46.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
42.8
-0.8
3
55.8
48.4
Minor BPS
68.4
0.66
1.2
80.81
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031188
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032408
6875181 - 6878741
3561
ENSAPLT00000026743
6875181 - 6878632
3452