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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_68872454_68874680_F

Intron Information:

Intron Rank:
131034
Intron Class:
major
Intron Phase:
Intron Coordinates:
68872454 - 68874680
Intron Length:
2227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTCTGCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
82.5
0.73
0.8
75.8
32.8
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
48.4
-0.2
2.2
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020389
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022742
68870686 - 68874741
4056