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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6893025_6895675_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6893025 - 6895675

Intron Length:

2651

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGCCAC

5'SS Class:

strong_major

3'SS Sequence:

CTCCATCCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCCAT

U12 Branch Point Sequence:

TTGCTCTCCATC

Flanking Amino Acid:

AVPGAQEALKRLRSAPVTIR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.9

42.3

Major BPS

64.7

0.37

1.3

74.7

Major PPT

68.7

0.42

0.9

66.6

33.9

Minor 5ss

27.8

-2.5

45.6

Minor BPS

46.5

-0.2

1.9

59.29

40.3

Associated Gene:

Gene:

HDHD2

Ensembl Gene ID:

ENSAPLG00000004974

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005137

6892923 - 6927986

35064

ENSAPLT00000046617

6892919 - 6904858

11940