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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6895885_6898523_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6895885 - 6898523

Intron Length:

2639

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

TTTGATCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ACGTTTTGATCT

Flanking Amino Acid:

VDDKALPDFTGIATEDPNAV

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

37.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

82.8

0.74

0.9

73.8

41.4

Minor 5ss

31.6

-2.1

3.2

41.1

45.6

Minor BPS

-0

1.7

62.08

42.5

Associated Gene:

Gene:

HDHD2

Ensembl Gene ID:

ENSAPLG00000004974

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046617

6892919 - 6904858

11940

ENSAPLT00000005137

6892923 - 6927986

35064