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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6898609_6901397_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6898609 - 6901397

Intron Length:

2789

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

ATTCACCCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTCTTCTTCATT

Flanking Amino Acid:

FHYEMMNKAFRLILDGAPLI

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

69.2

43.2

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

75.8

0.58

0.9

71.1

34.9

Minor 5ss

-1.8

2.9

42.1

44.4

Minor BPS

66.4

0.6

1.7

82.74

39.5

Associated Gene:

Gene:

HDHD2

Ensembl Gene ID:

ENSAPLG00000004974

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046617

6892919 - 6904858

11940

ENSAPLT00000005137

6892923 - 6927986

35064