Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6921238_6923715_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6921238 - 6923715

Intron Length:

2478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

ATATATGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

GTTTTGCTAACA

Flanking Amino Acid:

MRELATVVSKDIYLHNPNVK

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.2

30.2

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

73.1

0.52

66.2

44.2

Minor 5ss

39.9

-1.1

49.1

Minor BPS

50.9

0.02

2.3

72.44

39.4

Associated Gene:

Gene:

KATNAL2

Ensembl Gene ID:

ENSAPLG00000005005

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043154

6906024 - 6931484

25461

ENSAPLT00000005177

6906024 - 6942635

36612