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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6964814_6967719_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6964814 - 6967719
Intron Length:
2906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATCTTTAATT
Flanking Amino Acid:
SISWASEIGKNYSMSVYLVR
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
77
30.9
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
78.5
0.97
1.1
84.32
36.9

Associated Gene:

Gene:
PIAS2
Ensembl Gene ID:
ENSAPLG00000005190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015500
6948046 - 7143151
195106
ENSAPLT00000005405
6948046 - 6976586
28541
ENSAPLT00000002495
6948046 - 6976947
28902