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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6970247_6970658_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6970247 - 6970658
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAA
Flanking Amino Acid:
VSSPQCTKIESSSVVTKPCS
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
70
0.62
1.3
75.65
35.9

Associated Gene:

Gene:
PIAS2
Ensembl Gene ID:
ENSAPLG00000005190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015500
6948046 - 7143151
195106
ENSAPLT00000005405
6948046 - 6976586
28541
ENSAPLT00000002495
6948046 - 6976947
28902