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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6973141_6974946_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6973141 - 6974946
Intron Length:
1806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATCC
Flanking Amino Acid:
PISSISSDLPGLDFLSLIPV
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
58.9
0.26
1.8
73.67
36.9

Associated Gene:

Gene:
PIAS2
Ensembl Gene ID:
ENSAPLG00000005190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015500
6948046 - 7143151
195106
ENSAPLT00000005405
6948046 - 6976586
28541
ENSAPLT00000002495
6948046 - 6976947
28902