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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70368776_70405889_F

Intron Information:

Intron Rank:
142706
Intron Class:
major
Intron Phase:
Intron Coordinates:
70368776 - 70405889
Intron Length:
37114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGAAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.3
0.48
1
67.7
41.8
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
67.7
0.63
1.5
83.39
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026929
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047705
70368734 - 70408077
39344