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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70457853_70458205_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
70457853 - 70458205
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGTC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
TCCTCCAAAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
69.8
34.8
Major BPS
67
0.42
1.1
58
38.5
Major PPT
85.8
0.8
0.7
84.6
30.3
Minor 5ss
27.7
-2.6
3.6
40.1
46.3
Minor BPS
53.6
0.09
2
67.02
44.7

Associated Gene:

Gene:
C9orf72
Ensembl Gene ID:
ENSAPLG00000004240
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036031
70457786 - 70471362
13577