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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70458692_70461615_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70458692 - 70461615
Intron Length:
2924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTATATTTAACT
Flanking Amino Acid:
IRKGRIWMHKERQEHFQKIV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
80.1
0.68
0.8
80
32
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
77
0.92
1.4
90
33.5

Associated Gene:

Gene:
C9orf72
Ensembl Gene ID:
ENSAPLG00000004240
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036031
70457786 - 70471362
13577