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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70461676_70462658_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70461676 - 70462658
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTG
Flanking Amino Acid:
LEGTERMEDQGQSIIPMLTG
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
74.4
36
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.1
0.54
1
68.9
41.1
Minor 5ss
32.2
-2
3
40.3
45.3
Minor BPS
57.5
0.1
1.8
67.9
40.3

Associated Gene:

Gene:
C9orf72
Ensembl Gene ID:
ENSAPLG00000004240
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036031
70457786 - 70471362
13577