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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70463480_70465523_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70463480 - 70465523
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAATT
5'SS Class:
major
3'SS Sequence:
TTTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTTATTAACC
Flanking Amino Acid:
GDSCHEGFLLNAISSHLQTC
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
80
32.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.4
0.98
0.7
89.1
26.3
Minor 5ss
47.2
-0.3
2.9
67
38
Minor BPS
68.2
0.55
1.5
75.21
34.3

Associated Gene:

Gene:
C9orf72
Ensembl Gene ID:
ENSAPLG00000004240
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036031
70457786 - 70471362
13577
ENSAPLT00000022255
70461778 - 70471362
9585
ENSAPLT00000004378
70458206 - 70471101
12896