About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7046552_7048710_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7046552 - 7048710
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCT
Flanking Amino Acid:
QDIIEVKVLSMVKQTELFDR
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.7
85.8
28.4
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
67.7
0.63
1.6
82.72
39.3

Associated Gene:

Gene:
ST8SIA5
Ensembl Gene ID:
ENSAPLG00000011069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011547
7020594 - 7058822
38229