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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7048798_7051255_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7048798 - 7051255
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTATTGATCT
Flanking Amino Acid:
EMNVTEANLFKSTLSRCCNA
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.1
0.88
0.7
83.7
30.9
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
56.6
0.29
1.9
81.91
39.4

Associated Gene:

Gene:
ST8SIA5
Ensembl Gene ID:
ENSAPLG00000011069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011547
7020594 - 7058822
38229