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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70566892_70581352_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70566892 - 70581352
Intron Length:
14461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCTATTTAATC
Flanking Amino Acid:
LIDRKELEPLKEMTTRMCH*
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
62.8
0.38
1.5
67.67
38.3

Associated Gene:

Gene:
MOB3B
Ensembl Gene ID:
ENSAPLG00000004299
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046470
70526903 - 70581382
54480
ENSAPLT00000043161
70495128 - 70581382
86255