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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70566892_70591986_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70566892 - 70591986
Intron Length:
25095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGCCACTGACCC
Flanking Amino Acid:
LIDRKELEPLHTAPVAVAPA
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
85
0.79
0.7
79.9
25.5
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
43.2
-0.5
1.8
49.28
40.1

Associated Gene:

Gene:
MOB3B
Ensembl Gene ID:
ENSAPLG00000004299
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019465
70495128 - 70593111
97984
ENSAPLT00000038893
70495128 - 70593111
97984
ENSAPLT00000023985
70526903 - 70593111
66209