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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70566892_70598694_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70566892 - 70598694
Intron Length:
31803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGACAT
Flanking Amino Acid:
LIDRKELEPLLSGGSAGFTV
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.9
0.7
0.7
80.5
24.7
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
52.2
0.15
2
79.58
41.7

Associated Gene:

Gene:
MOB3B
Ensembl Gene ID:
ENSAPLG00000004299
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004409
70533670 - 70598826
65157