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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7057366_7058353_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7057366 - 7058353
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCATTTCA
5'SS Class:
major
3'SS Sequence:
CTTTTCCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTTTTCCAATT
Flanking Amino Acid:
VTVNPSIITERFHKLEKWRK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
70.5
36.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
71.4
0.48
0.9
72
33
Minor 5ss
36
-1.6
2.6
43.1
43.7
Minor BPS
49.8
0.06
1.8
71.91
39.9

Associated Gene:

Gene:
ST8SIA5
Ensembl Gene ID:
ENSAPLG00000011069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011547
7020594 - 7058822
38229