About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70610170_70611356_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
70610170 - 70611356

Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATTATGC

5'SS Class:
major

3'SS Sequence:
GTATACATAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATACAT

U12 Branch Point Sequence:
GTATACATAACA

Flanking Amino Acid:
EAQKKDSDKQVCNKNEMEPF

Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.7
0.51
1.1
61.4
38.3

Major BPS
74.9
0.62
1
81.3
29.9

Major PPT
62.8
0.29
1.1
56
43

Minor 5ss
44.4
-0.6
2.8
60
44.5

Minor BPS
59
0.28
1.8
71.8
39.2

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

70606554 - 70625545
18992