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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_70617746_70618381_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70617746 - 70618381
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGCTCATTAAAT
Flanking Amino Acid:
VGSPGCQIAKCYTSQGLELT
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
77.8
33.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
40.1
-1.1
3.4
55.5
48.7
Minor BPS
64.6
0.53
1.7
79.63
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012811
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030800
70606554 - 70625545
18992